Matrix-Single Cell
![](https://eadn-wc05-12559529.nxedge.io/media/catalog/product/cache/808048b9bba6c7cc6a8b323363b98824/1/0/106031_matrix_-_single_cell_1.jpg)
A) Sample correlation matrix of published marker genes in the MSBB
![](https://miro.medium.com/v2/resize:fit:1400/1*OLxsKukiPSS20z0KUMdtOQ.jpeg)
Reduce Dimensions for Single Cell, by Nikolay Oskolkov
![](https://prod-shared-star-protocols.s3.amazonaws.com/protocols/1530-GA.jpg)
Processing single-cell RNA-seq datasets using SingCellaR
![](https://hbctraining.github.io/scRNA-seq/img/sc_pre-QC_workflow.png)
Generation of count matrix Introduction to Single-cell RNA-seq - ARCHIVED
![](https://media.springernature.com/m685/springer-static/image/art%3A10.1038%2Fs41467-021-22197-x/MediaObjects/41467_2021_22197_Fig1_HTML.png)
scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses
![](https://hbctraining.github.io/In-depth-NGS-Data-Analysis-Course/sessionIV/img/sc_analyses.png)
Single-cell RNA-seq: Generation of count matrix
![](https://media.springernature.com/m685/springer-static/image/art%3A10.1038%2Fs41587-023-01940-3/MediaObjects/41587_2023_1940_Fig1_HTML.png)
Supervised discovery of interpretable gene programs from single-cell data
![](https://d3i71xaburhd42.cloudfront.net/2cf0463113e60d5047b785b879ea4ba56ae07aaa/5-Figure2-1.png)
Impact of Data Preprocessing on Integrative Matrix Factorization of Single Cell Data
![](https://www.researchgate.net/publication/344280200/figure/fig4/AS:1018793912446976@1619910805225/Strategies-for-the-integrative-analysis-of-single-cell-multiomics-data-Blue-and-green.png)
Strategies for the integrative analysis of single-cell multiomics data.
![](https://www.researchgate.net/publication/346357922/figure/fig1/AS:970780259151873@1608463458326/The-main-stages-of-single-cell-analysis-separated-broadly-into-the-upper-and-lower.jpg)
The main stages of single-cell analysis, separated broadly into the
![](https://iiif.elifesciences.org/lax/43803%2Felife-43803-fig2-v2.tif/full/1500,/0/default.jpg)
Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq
![](https://www.cell.com/cms/asset/c6589615-c4c0-4764-9a87-afaedf264684/fx1.jpg)
Improved integration of single-cell transcriptome and surface protein expression by LinQ-View: Cell Reports Methods
![](https://www.researchgate.net/publication/343391783/figure/fig4/AS:959965472776204@1605885012651/From-left-to-right-Confusion-matrix-for-the-automatic-single-cell-classification.png)
From left to right: Confusion matrix for the automatic single cell
![](https://ucdavis-bioinformatics-training.github.io/2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF/data_reduction/figures/flowchart2.png)
Generating a Gene Expression Matrix UC Davis Bioinformatics Core June/July 2019 scRNA-Seq Workshop @ UCD and UCSF
![](https://media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs13059-020-02147-4/MediaObjects/13059_2020_2147_Fig3_HTML.png)
CSS: cluster similarity spectrum integration of single-cell genomics data, Genome Biology